HTML tutorial



Python Script


Command Line Script Download

CHAT is available as a fully featured python 3 script with a variety of options for varying analysis parameters or bulk scripting.

Using these files, you can run the script with minimal parameters (replace python3 with the command for python 3 on your system if necssary:

python3 -x exampleNetwork.xgmml -m all.mitab -a pVal

python3 -n exampleGeneList.txt -m all.mitab

Running python3 -h or simply on its own will produce the basic help information. For a detailed description of possible parameters, look here.

Primes Project Logo SFI Logo FP7 Logo

The research leading to these results received funding from the European Union Seventh Framework Programme (FP7/2007-2013) PRIMES project grant FP7-HEALTH-2011-278568 & Science Foundation Ireland grant 09/IN.1/B2642.

Developed by the Lynn EMBL Australia Group.